Link_pathway_blocks_gwas: Link_pathway_blocks_gwas

In dengchunyu/scPagwas: A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data

Link_pathway_blocks_gwas

Description

Link pathway blocks region and gwas summary snps Takes block information, potentially independent LD pathway_blocks or gene blocks,

Usage

Link_pathway_blocks_gwas(
  Pagwas,
  chrom_ld = NULL,
  singlecell = T,
  celltype = T,
  backingpath,
  n.cores = 1
)

Arguments

Pagwas	Pagwas format, deault is NULL.
chrom_ld	LD data for 22 chromosome.
singlecell	whether to run singlecell progress
celltype	whether to run celltype progress
backingpath	file address for bk files, no "/" in the end.
n.cores	cores for regression

Value

Pagwas list of blocks for snp to gene and pathway score.

Author(s)

Chunyu Deng

dengchunyu/scPagwas documentation built on Nov. 29, 2024, 2:53 p.m.