bootstrap_estimate_Plot: Bootstrap_estimate_Plot

In dengchunyu/scPagwas: A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data

Bootstrap_estimate_Plot

Description

This forest plot shows the correct estimate values and 95% CI for different celltyppes, using the ggplot packages

Usage

Bootstrap_estimate_Plot(
  bootstrap_results,
  figurenames = NULL,
  width = 9,
  height = 7,
  do_plot = F
)

Arguments

bootstrap_results	result list of Pagwas from Pagwas$bootstrap_results or Pagwas@misc$bootstrap_results
figurenames	The filename and address of the output plot, default is "test_forest.pdf".IF figurenames= NULL, only plot the figure and have not pdf figure.
width	figure width
height	figure height
do_plot	whether to plot the plot.

Value

A forest plot with the table of p values

Author(s)

Chunyu Deng

Examples

library(scPagwas)
load(system.file("extdata", "Pagwas_data.RData", package = "scPagwas"))

Bootstrap_estimate_Plot(
  Pagwas = Pagwas_data,
  width = 9,
  height = 7,
  do_plot = TRUE
)

dengchunyu/scPagwas documentation built on Nov. 29, 2024, 2:53 p.m.