corSparse: various association measures between sparse matrices

In dengchunyu/scPagwas: A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data

various association measures between sparse matrices

Description

Pearson correlation matrix between columns of X, Y modification the code from: http://stackoverflow.com/questions/5888287/running-cor-or-any-variant- over-a-sparse-matrix-in-r https://github.com/cysouw/qlcMatrix/blob/master/R/assoc.R

Usage

corSparse(X, Y)

Arguments

X	matrix
Y	matrix or vector

Value

correlation cofficient

Note

Note that results larger than 1e4 x 1e4 will become very slow, because the resulting matrix is not sparse anymore.

dengchunyu/scPagwas documentation built on Nov. 29, 2024, 2:53 p.m.