Files in dengchunyu/scPagwas
A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data
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DESCRIPTION
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LICENSE.md
NAMESPACE
NEWS.md
R/.Rhistory
R/Celltype_heritability_contributions.R
R/GWAS_summary_input.R
R/Get_CorrectBg_p.R
R/Link_pathway_blocks_gwas.R
R/Pathway_annotation_input.R
R/Pathway_pcascore_run.R
R/Single_data_input.R
R/Singlecell_heritability_contributions.R
R/SnpToGene.R
R/bootstrap_result_visualize.R
R/heritability_cor_scatterplot.R
R/plot_bar_positie_nagtive.R
R/plot_vln_Corgenes.R
R/redunce_pathway.R
R/scGene_rankP.R
R/scPagwas-data.R
R/scPagwas_Visualization.R
R/scPagwas_main.R
R/scPagwas_main2.R
R/sub_functions.R
README.Rmd
README.md
Test/1_Pathway_sclm_results.RData
Test/2_Pathway_sclm_results.RData
Test/3_Pathway_sclm_results.RData
_pkgdown.yml
data/Genes_by_pathway_kegg.RData
data/block_annotation.RData
data/block_annotation_hg37.RData
data/chrom_ld.RData
data/genes.by.gobp.pathway.RData
data/genes.by.reactome.pathway.RData
data/genes.by.regulatory.pathway.RData
data/genes.by.tft.pathway.RData
data/reduce_genes.by.gobp.pathway.RData
data/reduce_genes.by.reactome.pathway.RData
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vignettes/.DS_Store
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vignettes/Conventional Parameters and Usage Instructions with Demo Example Data.Rmd
vignettes/Conventional result and visualization Instructions with Real-World Examples.Rmd
vignettes/Introduction to Data Input and Preprocessing in scPagwas.Rmd
vignettes/Perform calculations for multiple traits based on a single-cell dataset.Rmd
vignettes/Pruning Process for GWAS Summary Statistics File in scPagwas.Rmd
vignettes/Strategies for Large-scale Single-cell Data Subsetting and Computation.Rmd
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