Man pages for dengchunyu/scPagwas
A pathway-based polygenic integration method for inferring disease-associated individual cells in single cell sequencing data
| as_matrix | Convert a large sparse matrix into a dense matrix without... |
| bh.adjust | bh.adjust |
| block_annotation | block_annotation |
| block_annotation_hg37 | block_annotation_hg37 |
| Boot_evaluate | Boot_evaluate |
| bootstrap_estimate_Plot | Bootstrap_estimate_Plot |
| bootstrap_P_Barplot | Bootstrap_P_Barplot |
| chrom_ld | chrom_ld |
| correct_background | correct_background |
| Corr_Random | Corr_Random Split the large-scale single-cell data and... |
| corSparse | various association measures between sparse matrices |
| fortify.Seurat.tsne | fortify.Seurat.tsne |
| fortify.Seurat.umap | fortify.Seurat.umap |
| genes.by.celltype.pathway | genes.by.celltype.pathway |
| genes.by.gobp.pathway | genes.by.gobp.pathway |
| genes.by.hallmark.pathway | genes.by.hallmark.pathway |
| Genes_by_pathway_kegg | Genes_by_pathway_kegg |
| genes.by.reactome.pathway | genes.by.reactome.pathway |
| genes.by.regulatory.pathway | genes.by.regulatory.pathway |
| genes.by.tft.pathway | genes.by.tft.pathway |
| Get_bootresults_df | Get_bootresults_df |
| Get_CorrectBg_p | Get_CorrectBg_p |
| Get_Pathway_heritability_contributions | Get_Pathway_heritability_contributions |
| get_Pathway_sclm | get_Pathway_sclm |
| get_p_from_empi_null | get_p_from_empi_null |
| GWAS_summary_input | GWAS_summary_input |
| heritability_cor_scatterplot | heritability_cor_scatterplot |
| lfdr | Estimate local False Discovery Rate (FDR) |
| Link_pathway_blocks_gwas | Link_pathway_blocks_gwas |
| link_pwpca_block | link_pwpca_block |
| make_ld_matrix | make_ld_matrix |
| Merge_celltype_p | Merge_celltype_p |
| Merge_gPas | Merge_gPas |
| Pagwas_perform_regression | Pagwas_perform_regression |
| pa_meanexpr | pa_meanexpr |
| Parameter_regression | Parameter_regression |
| Pathway_annotation_input | Pathway_annotation_input |
| Pathway_block_func | Pathway_block_func |
| Pathway_pcascore_run | Pathway_pcascore_run |
| PathwayPCAtest | PathwayPCAtest |
| pi0est | Proportion of true null p-values |
| plot_bar_positie_nagtive | plot_bar_positie_nagtive |
| plot_vln_Corgenes | plot_vln_Corgenes |
| p_merge | p_merge |
| qvalue | Estimate the q-values for a given set of p-values |
| reduce_pathway | reduce_pathway |
| scCount_data_input | scCount_data_input |
| scGene_rankP | scGene_rankP |
| scGene_scaleP | scGene_scaleP |
| scGet_PCC | scGet_PCC |
| scPagwas_main | Main wrapper functions for scPagwas |
| scPagwas_perform_score | scPagwas_perform_score |
| scPagwas_score_filter | scPagwas_score_filter |
| scPagwas_Visualization | scPagwas_Visualization |
| scParameter_regression | scParameter_regression |
| Single_data_input | Single_data_input |
| SnpToGene | Functions for mapping Snps to Genes |
| umap_theme | umap_theme |
| xy2vector | xy2vector |
