Files in desmchoy/BinaryClust
CyTOF Analysis Pipeline Using Binary Classification Followed by Clustering
DESCRIPTION
LICENSE
NAMESPACE
R/clustering.R
R/convenience.R
R/differential_expressions.R
R/dimensionality_reduction.R
R/plot.R
R/preprocessing.R
README.md
images/CD3.png
images/CD3_shaded.png
images/NRS.png
images/cell_type_abundances.png
images/cell_type_medians.png
images/diff_abundances_bar.png
images/diff_abundances_dot.png
images/diff_exp.png
images/examine_data.png
images/heatmap_CD8T.png
images/plot_TSNE.png
images/plot_TSNE_marker_CD8.png
images/plot_UMAP.png
images/plot_UMAP_marker_CD8.png
images/schematic.png
inst/testdata/DE.csv
inst/testdata/HD.csv
inst/testdata/HD.fcs
inst/testdata/tsne.rds
inst/testdata/types.csv
inst/testdata/umap.rds
man/binary_class.Rd
man/binary_summary.Rd
man/calculate_diff.Rd
man/cluster_subsets.Rd
man/cluster_summary.Rd
man/examine_data.Rd
man/load_data.Rd
man/load_multi_samples.Rd
man/plot_NRS.Rd
man/plot_TSNE.Rd
man/plot_TSNE_marker.Rd
man/plot_UMAP.Rd
man/plot_UMAP_marker.Rd
man/plot_binary_abundances.Rd
man/plot_binary_median.Rd
man/plot_cluster_heatmap.Rd
man/plot_diff_abundances.Rd
man/plot_diff_exp.Rd
man/print_parameters.Rd
man/run_BinaryClust.Rd
man/run_TSNE.Rd
man/run_UMAP.Rd
man/update_cluster_results.Rd
