load_data: Loading an FCS File

In desmchoy/BinaryClust: CyTOF Analysis Pipeline Using Binary Classification Followed by Clustering

Loading an FCS File

Description

This function reads an FCS file and returns a data frame of read counts

Usage

load_data(
  input.file = NULL,
  channels = NULL,
  transform = "arcsinh",
  cofactor = 5
)

Arguments

input.file	(Required) Path to input file
channels	Default: NULL. Specify to subset data. Please provide a vector with full channel name (e.g. c('142Nd_CD19', '154Sm_CD3')). Channel names can be found using the print_parameters function.
transform	'arcsinh' or 'none'. 'arcsinh' performs an arcsinh transformation. 'none' performs no data trasformation
cofactor	Cofactor for arcsinh transformation (Default: 5)

Examples

data <- load_data('example.fcs')

desmchoy/BinaryClust documentation built on Sept. 14, 2024, 12:03 a.m.