plot_binary_abundances: Plotting abundances based on binary classification results

In desmchoy/BinaryClust: CyTOF Analysis Pipeline Using Binary Classification Followed by Clustering

Plotting abundances based on binary classification results

Description

This function plots the abundanceresults of binary classification. Returns a graph.

Usage

plot_binary_abundances(
  binary.summary = NULL,
  remove.unclass = FALSE,
  xlabel = "",
  ylabel = "Percentage Abundance",
  title = "Cell Abundances"
)

Arguments

binary.summary	(Required) A data frame containing abundance results. Expects results from binary_summary
remove.unclass	Option to remove unclassified cells from plot. (Default: FALSE)
xlabel	Label for x-axis (Default: NULL)
ylabel	Label for y-axis (Default: 'Percentage Abundance')
title	Plot title (Default: 'Cell Abundances')

Examples

plot_binary_abundances(binary.summary)

desmchoy/BinaryClust documentation built on Sept. 14, 2024, 12:03 a.m.