plot_diff_abundances: Plotting abundances of multiple datasets

In desmchoy/BinaryClust: CyTOF Analysis Pipeline Using Binary Classification Followed by Clustering

Plotting abundances of multiple datasets

Description

This function plots the abundance of multiple datasets. Returns a graph.

Usage

plot_diff_abundances(
  multi.data = NULL,
  column = "Cell.Type",
  remove.unclass = FALSE,
  style = "bar"
)

Arguments

multi.data	(Required) A data frame of clustering results. Expects results from load_multi_samples
column	Choose between plotting Cell.Type or Cell.Subtype (Default: Cell.Type)
remove.unclass	Option to remove unclassified cells from plot (Default: FALSE)
style	Choose between two styles of plots, bar or dot (Default: bar)

Examples

plot_diff_abundances(multi.data)
plot_diff_abundances(multi.data, column = 'Cell.Subtype', style = 'dot')

desmchoy/BinaryClust documentation built on Sept. 14, 2024, 12:03 a.m.