run_UMAP: Calculating UMAP coordinates for data

In desmchoy/BinaryClust: CyTOF Analysis Pipeline Using Binary Classification Followed by Clustering

Calculating UMAP coordinates for data

Description

This function calculates UMAP coordinates on data. Random seed is set to 1. Returns full UMAP object.

Usage

run_UMAP(data = NULL, scale = TRUE)

Arguments

data	(Required) Data in data frame format. Expects results from load_data
scale	Default: TRUE. Option to standardise data prior to UMAP calculations

Examples

umap.results <- run_UMAP(data)

UMAP coordinates can be extracted under layout:
umap.coordinates <- umap.results$layout

desmchoy/BinaryClust documentation built on Sept. 14, 2024, 12:03 a.m.