plot_TSNE_marker: Colouring t-SNE results with marker expressions

plot_TSNE_markerR Documentation

Colouring t-SNE results with marker expressions

Description

This function colours t-SNE results by marker expressions. Returns a graph.

Usage

plot_TSNE_marker(
  tsne.results = NULL,
  data = NULL,
  marker = NULL,
  lower = NULL,
  upper = NULL,
  palette = "Purples",
  title = ""
)

Arguments

tsne.results

(Required) t-SNE object. Expects results from run_TSNE

data

(Required) Data in data frame format. Expects results from load_data

marker

(Required) Marker to be coloured

lower

Lower bound of colour spectrum (Default: Lowest value of marker expression)

upper

Upper bound of colour spectrum (Default: Highest value of marker expression)

palette

ggplot2 colour spectrum (Default: 'Purples')

title

Title of plot (Default: NULL)

Examples

plot_TSNE_marker(tsne.results, data, marker = 'CD45')

desmchoy/BinaryClust documentation built on Sept. 14, 2024, 12:03 a.m.