Man pages for desmchoy/BinaryClust
CyTOF Analysis Pipeline Using Binary Classification Followed by Clustering
| binary_class | Performing binary classification |
| binary_summary | Summarising binary classification results |
| calculate_diff | Performing differential analysis on multiple datasets |
| cluster_subsets | Clustering binary classified results |
| cluster_summary | Summarising clustering results |
| examine_data | Examining an FCS File |
| load_data | Loading an FCS File |
| load_multi_samples | Loading BinaryClust results of multiple datasets |
| plot_binary_abundances | Plotting abundances based on binary classification results |
| plot_binary_median | Plotting median expressions based on binary classification... |
| plot_cluster_heatmap | Plotting heatmaps for post-binary classification clustering... |
| plot_diff_abundances | Plotting abundances of multiple datasets |
| plot_diff_exp | Plotting differential analysis results |
| plot_NRS | Calculating and plotting non-redundancy scores (NRS) |
| plot_TSNE | Plotting binary classification results on t-SNE coordinates |
| plot_TSNE_marker | Colouring t-SNE results with marker expressions |
| plot_UMAP | Plotting binary classification results on UMAP coordinates |
| plot_UMAP_marker | Colouring UMAP results with marker expressions |
| print_parameters | Printing the parameters of an FCS file |
| run_BinaryClust | Running BinaryClust with default settings |
| run_TSNE | Calculating t-SNE coordinates for data |
| run_UMAP | Calculating UMAP coordinates for data |
| update_cluster_results | Updating clustering results with filled subtype column |
