| alleleFrequency | Determines the frequency of each allele in each population |
| arp2vcf | Converts fastsimcoal2 simulated DNA data to a vcf format |
| contigHap | Assembles the contig haplotype from a phased vcf |
| findfixedSNP | Calculates allele frequency in each population. |
| getAlleleCount | Determines the number of copies of each allele of a locus in... |
| getAllelePop | Determines the number of copies of each allele of a locus in... |
| mergeReads | Reads raw fastq files and concatenates the forward and... |
| recodeGT | Recode the genotype with the allele |
| vcf2genind | Fast conversion of vcf to genind |
| vcfLoad | Loads a vcf and parse by SNP information per sample |
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