Counts the number of each allele of a locus in each individual. If an individual or sample is not genotyped for a certain locus, the count will be marked as NA.
getAllelePop(dataIn, popInfo, ploidy = 2)
data.table summarizing the alleles present in all samples. This should be an output of recodeGT function.
A data.table with contig info (#CHROM), SNP position (POS), Allele, sample ID, and the count of the allele of a particular SNP in an individual
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