getAllelePop: Determines the number of copies of each allele of a locus in...
In dinmatias/reconproGS:
Description
Usage
Arguments
Value
Examples
Description
Counts the number of each allele of a locus in each individual. If an individual
or sample is not genotyped for a certain locus, the count will be marked as NA.
Usage
1
getAllelePop(dataIn, popInfo, ploidy = 2)
Arguments
tempRes
data.table summarizing the alleles present in all samples.
This should be an output of recodeGT function.
Value
A data.table with contig info (#CHROM), SNP position (POS), Allele,
sample ID, and the count of the allele of a particular SNP in an individual
Examples
1
# To follow
dinmatias/reconproGS documentation built on May 19, 2019, 1:43 a.m.
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Description Usage Arguments Value Examples
Description
Counts the number of each allele of a locus in each individual. If an individual or sample is not genotyped for a certain locus, the count will be marked as NA.
Usage
1 | getAllelePop(dataIn, popInfo, ploidy = 2)
|
Arguments
tempRes |
data.table summarizing the alleles present in all samples. This should be an output of recodeGT function. |
Value
A data.table with contig info (#CHROM), SNP position (POS), Allele, sample ID, and the count of the allele of a particular SNP in an individual
Examples
1 | # To follow
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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