Description Usage Arguments Value Examples
Merge the forward and reverse reads of fastq files. This basically concatenates the sequence and the read quality and uses the sequence infromation and other metadata of the forward read. The fastqfile should have the following name format: name.F.fq for the forward and name.R.fq for the reverse.
1 | mergeReads(filePath, fastqNam, outFile = NULL, chunkLines = 2e+05)
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filePath |
full path to the directory containing the forward and reverse reads |
fastqNam |
name of the fastq file. See Details |
outFile |
name of the fastq file to be generated |
NULL; saves a fastq file instead.
1 | mergeReads(filePath = "rawReads/", fasqNam = "EMSE_5102")
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