mergeReads: Reads raw fastq files and concatenates the forward and...

In dinmatias/reconproGS:

Description

Merge the forward and reverse reads of fastq files. This basically concatenates the sequence and the read quality and uses the sequence infromation and other metadata of the forward read. The fastqfile should have the following name format: name.F.fq for the forward and name.R.fq for the reverse.

Usage

mergeReads(filePath, fastqNam, outFile = NULL, chunkLines = 2e+05)

Arguments

filePath	full path to the directory containing the forward and reverse reads
fastqNam	name of the fastq file. See Details
outFile	name of the fastq file to be generated

Value

NULL; saves a fastq file instead.

Examples

mergeReads(filePath = "rawReads/", fasqNam = "EMSE_5102")

dinmatias/reconproGS documentation built on May 19, 2019, 1:43 a.m.