Description Usage Arguments Value Examples
Takes input vcf or data.table loaded using vcfLoad function and determines the allelic frequency of every allele in each SNP in the provided population information
1 2 | alleleFrequency(filePath = NULL, dataIn = NULL, popInfo = NULL,
ploidy = 2)
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filePath |
full path to the vcf file |
dataIn |
data.table obtained using vcfLoad function |
popInfo |
dataframe with population identifier (column1) and sample identifier (column2) |
A data.table with contig info (#CHROM), SNP position (POS), Allele, Population ID (Pop), and the count of the allele (Count), estimate of allele freuquency in a population (Frequency), and variance of the allele frequency (Variance).
1 | # To follow
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