alleleFrequency: Determines the frequency of each allele in each population
In dinmatias/reconproGS:

Description Usage Arguments Value Examples

Takes input vcf or data.table loaded using vcfLoad function and determines the allelic frequency of every allele in each SNP in the provided population information

1 2	alleleFrequency(filePath = NULL, dataIn = NULL, popInfo = NULL, ploidy = 2)

`filePath`	full path to the vcf file
`dataIn`	data.table obtained using vcfLoad function
`popInfo`	dataframe with population identifier (column1) and sample identifier (column2)

A data.table with contig info (#CHROM), SNP position (POS), Allele, Population ID (Pop), and the count of the allele (Count), estimate of allele freuquency in a population (Frequency), and variance of the allele frequency (Variance).