arp2vcf: Converts fastsimcoal2 simulated DNA data to a vcf format
In dinmatias/reconproGS:

Description Usage Arguments Value Examples

This parses an arlequin formatted output of fastsimcoal2. Then, it converts the file into a vcf. The fastsimcoal2 simulates alleles, this function assembles those alleles into individual using the given ploidy. Individual genotypes are labeled by individual number and population.

1	arp2vcf(filePath = NULL, outFile = NULL, ploidy = 2)

`filePath`	full path and name of the arp file
`outFile`	full path and name of the desired outfile file
`ploidy`	ploidy of the organism. Default is 2 (diploid)

A data.table with structure similar to a vcf

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filePath <- "D:/OneDrive/uniFiles/coalescentSimu/snputility/simuRADseq_2Pop/simuRADseq/simuRADseq_1_1.arp"
ploidy <- 2
x <- arp2vcf(filePath = filePath, ploidy = ploidy)