recodeGT: Recode the genotype with the allele
In dinmatias/reconproGS:
Description
Usage
Arguments
Value
Examples
Description
Converts the genotype written by vcf using numbers to allele. This is
internally called by other functions that are involved in getting allele
counts. Moreover, this functions simplifies the data by removing other
information of the vcf.
Usage
1
recodeGT(dataIn)
Arguments
dataIn
data.table obtained using vcfLoad function
Value
A data.table with contig info (#CHROM), SNP position (POS), sample ID
and the alleles of the sample for that particular SNP
Examples
1
# To follow
dinmatias/reconproGS documentation built on May 19, 2019, 1:43 a.m.
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Description Usage Arguments Value Examples
Description
Converts the genotype written by vcf using numbers to allele. This is internally called by other functions that are involved in getting allele counts. Moreover, this functions simplifies the data by removing other information of the vcf.
Usage
1 | recodeGT(dataIn)
|
Arguments
dataIn |
data.table obtained using vcfLoad function |
Value
A data.table with contig info (#CHROM), SNP position (POS), sample ID and the alleles of the sample for that particular SNP
Examples
1 | # To follow
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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