alleleFrequency | Determines the frequency of each allele in each population |
arp2vcf | Converts fastsimcoal2 simulated DNA data to a vcf format |
contigHap | Assembles the contig haplotype from a phased vcf |
findfixedSNP | Calculates allele frequency in each population. |
getAlleleCount | Determines the number of copies of each allele of a locus in... |
getAllelePop | Determines the number of copies of each allele of a locus in... |
mergeReads | Reads raw fastq files and concatenates the forward and... |
recodeGT | Recode the genotype with the allele |
vcf2genind | Fast conversion of vcf to genind |
vcfLoad | Loads a vcf and parse by SNP information per sample |
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