API for drighelli/DEScan2
Differential Enrichment Scan 2

Global functions
DEScan2 Man page
DEScan2-package Man page
RleListToRleMatrix Man page Source code
binToChrCoordMatRowNames Man page Source code
binnedCovOnly Man page Source code
binnedCoverage Man page Source code
c_get_disjoint_max_win Man page Source code
computeCoverageMovingWindowOnChr Man page Source code
computeLambdaOnChr Man page Source code
computeZ Man page Source code
constructBedRanges Man page Source code
convertSallToGrl Source code
countFinalRegions Man page Source code
createGranges Man page Source code
cutGRangesPerChromosome Man page Source code
divideEachSampleByChromosomes Man page Source code
evenRunMean Man page Source code
evenRunSum Man page Source code
finalRegions Man page Source code
findOverlapsOverSamples Man page Source code
findPeaks Man page Source code
fromSamplesToChrsGRangesList Man page Source code
generateDFofSamplesPerChromosomes Man page Source code
get_disjoint_max_win Man page Source code
giveUniqueNamesToPeaksOverSamples Man page Source code
initMergedPeaksNames Man page Source code
keepRelevantChrs Man page Source code
loadPeaks Source code
rcpparma_get_disjoint_max_win Man page Source code
readBamAsBed Man page Source code
readBedFile Man page Source code
readFilesAsGRangesList Man page Source code
saveGRangesAsBed Man page Source code
saveGRangesAsTsv Man page Source code
setGRGenomeInfo Man page Source code
drighelli/DEScan2 documentation built on June 20, 2018, 2:22 a.m.