saveGRangesAsBed: saveGRangesAsBed

In drighelli/DEScan2: Differential Enrichment Scan 2

saveGRangesAsBed

Description

save a GRanges object as bed file.

Usage

saveGRangesAsBed(
  GRanges,
  filepath = tempdir(),
  filename = tempfile(),
  force = FALSE,
  verbose = FALSE
)

Arguments

GRanges	the GRanges object.
filepath	the path to store the files.@
filename	the name to give to the files.
force	force overwriting.
verbose	verbose output flag.

Value

none

Examples

library("GenomicRanges")
gr <- GRanges(
        seqnames=Rle(c("chr1", "chr2", "chr1", "chr3"), c(1, 3, 2, 4)),
        ranges=IRanges(1:10, end=10),
        strand=Rle(strand(c("-", "+", "*", "+", "-")), c(1, 2, 2, 3, 2)),
        seqlengths=c(chr1=11, chr2=12, chr3=13))

saveGRangesAsBed(GRanges=gr, filepath=tempdir(), filename=tempfile(),
                    verbose=TRUE)

drighelli/DEScan2 documentation built on March 21, 2023, 3:06 p.m.