computeCoverageMovingWindowOnChr: computeCoverageMovingWindowOnChr

In drighelli/DEScan2: Differential Enrichment Scan 2

computeCoverageMovingWindowOnChr

Description

computes the coverage on a chromosomewith a set of moving windows of dimensions minWinWidth:maxWinWidth

Usage

computeCoverageMovingWindowOnChr(
  chrBedGRanges,
  minWinWidth = 50,
  maxWinWidth = 1000,
  binWidth = 50,
  verbose = TRUE
)

Arguments

chrBedGRanges	a GRanges to compute the coverage
minWinWidth	the minimum width of the window to use for the coverage
maxWinWidth	the maximum width of the window to use for the coverage
binWidth	the dimension of the bin in base number

Value

RleList where each element is a window within the Rle of its coverage

drighelli/DEScan2 documentation built on March 21, 2023, 3:06 p.m.