inst/scripts/2.0.0/make-segerstolpe-pancreas-metadata.R

In drisso/scRNAseq: Collection of Public Single-Cell RNA-Seq Datasets

write.csv(file="../extdata/2.0.0/metadata-segerstolpe-pancreas.csv",
    data.frame(
        Title = sprintf("Segerstolpe pancreas %s", c("counts", "rowData", "colData")),
        Description = sprintf("%s for the Segerstolpe pancreas single-cell RNA-seq dataset", 
            c("Count matrix", "Per-gene metadata", "Per-cell metadata")),
        RDataPath = file.path("scRNAseq", "segerstolpe-pancreas", "2.0.0", 
            c("counts.rds", "rowdata.rds", "coldata.rds")),
        BiocVersion="3.10",
        Genome="hg19",
        SourceType="TSV",
        SourceUrl="https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-5061/",
        SourceVersion=c(
            "E-MTAB-5061.processed.1.zip",
            "E-MTAB-5061.processed.1.zip",
            "E-MTAB-5061.sdrf.txt"),
        Species="Homo sapiens",
        TaxonomyId="9606",
        Coordinate_1_based=NA,
        DataProvider="ArrayExpress",
        Maintainer="Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>",
        RDataClass=c("matrix", "DataFrame", "DataFrame"),
        DispatchClass="Rds",
        stringsAsFactors = FALSE
    ),
    row.names=FALSE)