inst/scripts/2.6.0/make-fletcher-olfactory-metadata.R

In drisso/scRNAseq: Collection of Public Single-Cell RNA-Seq Datasets

write.csv(file="../../extdata/2.6.0/metadata-fletcher-olfactory.csv",
    data.frame(
        Title = sprintf("Fletcher olfactory epithelial HBC stem cell differentiation %s", c("counts", "colData", "rowData")),
        Description = sprintf("%s for the Fletcher olfactory epithelial HBC stem cell differentiation dataset", 
            c("Count matrix", "Per-cell metadata", "Per-gene metadata")),
        RDataPath = file.path("scRNAseq", "fletcher-olfactory", "2.6.0", 
            c("counts.rds", "coldata.rds", "rowdata.rds")),
        BiocVersion="3.13",
        Genome="GRCm38.3",
        SourceType="TSV",
        SourceUrl="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE95601",
        SourceVersion=c(
            "GSE95601_oeHBCdiff_Cufflinks_eSet_counts_table.txt.gz",
            "GSE95601_oeHBCdiff_phenoData.txt.gz",
            "GSE95601_oeHBCdiff_Cufflinks_eSet_featureData.txt.gz"),
        Species="Mus Musculus",
        TaxonomyId="10090",
        Coordinate_1_based=NA,
        DataProvider="GEO",
        Maintainer="Davide Risso <risso.davide@gmail.com>",
        RDataClass=c("matrix", "DFrame", "DFrame"),
        DispatchClass="Rds",
        stringsAsFactors = FALSE
    ),
    row.names=FALSE)