grow.bed: grow the intervals in a bed file
In drmjc/blat: Import/Export functions for UCSC genome BLAT alignments
Description
Usage
Arguments
Value
TODO
Author(s)
Description
The galaxy flank tool returns only the flanks, not
the original regions. grow aims to provide the
functionality of flank,\ but also return the
original regions. ie, the seed regions will grow. Since
the regions grow, an offset is not supported.
Usage
1
grow.bed(x, upstream = 0, downstream = 0)
Arguments
x
a data.frame from import.ucsc.blat
upstream
numeric(1) indicating the nuber of bases
to grow in the upstream direction. default=0
downstream
numeric(1) indicating the nuber of
bases to grow in the downstream direction. default=0
Value
a data.frame
TODO
Add a check to make sure the regions don't extend beyond
the end of a chromosome.
Author(s)
Mark Cowley, 2011-11-29
drmjc/blat documentation built on May 15, 2019, 2:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value TODO Author(s)
Description
The galaxy flank tool returns only the flanks, not
the original regions. grow aims to provide the
functionality of flank,\ but also return the
original regions. ie, the seed regions will grow. Since
the regions grow, an offset is not supported.
Usage
1 | grow.bed(x, upstream = 0, downstream = 0)
|
Arguments
x |
a |
upstream |
numeric(1) indicating the nuber of bases to grow in the upstream direction. default=0 |
downstream |
numeric(1) indicating the nuber of bases to grow in the downstream direction. default=0 |
Value
a data.frame
TODO
Add a check to make sure the regions don't extend beyond the end of a chromosome.
Author(s)
Mark Cowley, 2011-11-29
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.