pslPercentIdentity: calculate the % identity of a psl alignment
In drmjc/blat: Import/Export functions for UCSC genome BLAT alignments
Description
Usage
Arguments
Author(s)
Examples
Description
Many years later, this version looks more robust than
pslPercentIdentity2 and pslPercentIdentity3
Usage
1
pslPercentIdentity(psl, isMrna = !pslIsProtein(psl))
Arguments
psl
a PSL object
isMrna
logical: protein scores are 3x size of
mrna/nucleotide scores.
Author(s)
Mark Cowley, 12 April 2006
Examples
1
2
3
f <- file.path(system.file(package="blat"), "examples", "test.psl")
psl <- import.psl(f, score=TRUE)[1:5,]
pslPercentIdentity(psl, FALSE)
drmjc/blat documentation built on May 15, 2019, 2:22 p.m.
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Description Usage Arguments Author(s) Examples
Description
Many years later, this version looks more robust than pslPercentIdentity2 and pslPercentIdentity3
Usage
1 | pslPercentIdentity(psl, isMrna = !pslIsProtein(psl))
|
Arguments
psl |
a PSL object |
isMrna |
logical: protein scores are 3x size of mrna/nucleotide scores. |
Author(s)
Mark Cowley, 12 April 2006
Examples
1 2 3 | f <- file.path(system.file(package="blat"), "examples", "test.psl")
psl <- import.psl(f, score=TRUE)[1:5,]
pslPercentIdentity(psl, FALSE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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