import.ucsc.bed: import a UCSC-format BED file

In drmjc/blat: Import/Export functions for UCSC genome BLAT alignments

Description

import a UCSC-format BED file

Usage

  import.ucsc.bed(x)

Arguments

x	the path to a bed file

Value

a data.frame representation of the BED file. Any browser or track lines will be lost upon import.

Author(s)

Mark Cowley, 2011-11-28

Examples

f <- file.path(system.file(package="blat"), "examples", "bed9_with_hdr.bed")
head(import.ucsc.bed(f))

f <- file.path(system.file(package="blat"), "examples", "bed9_no_hdr.bed")
head(import.ucsc.bed(f))

f <- file.path(system.file(package="blat"), "examples", "bed6_with_hdr.bed")
head(import.ucsc.bed(f))
f <- file.path(system.file(package="blat"), "examples", "bed6_no_hdr.bed")
head(import.ucsc.bed(f))

f <- file.path(system.file(package="blat"), "examples", "bed4_no_hdr.bed")
head(import.ucsc.bed(f))

f <- file.path(system.file(package="blat"), "examples", "bed3_no_hdr.bed")
head(import.ucsc.bed(f))

drmjc/blat documentation built on May 15, 2019, 2:22 p.m.