sort.psl: sort a psl file such that each query is together, then by...
In drmjc/blat: Import/Export functions for UCSC genome BLAT alignments
Description
Usage
Arguments
Author(s)
Examples
Description
sort a psl file such that each query is together, then by
score then by target name
Usage
1
sort.psl(psl)
Arguments
psl
a psl object
Author(s)
Mark Cowley, 3 August 2006
Examples
1
2
3
4
5
6
7
f <- file.path(system.file(package="blat"), "examples", "test.psl")
psl <- import.psl(f, score=FALSE)
head(sort.psl(psl))
f <- file.path(system.file(package="blat"), "examples", "test.psl")
psl <- import.psl(f, score=TRUE)
head(sort.psl(psl))
drmjc/blat documentation built on May 15, 2019, 2:22 p.m.
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Description Usage Arguments Author(s) Examples
Description
sort a psl file such that each query is together, then by score then by target name
Usage
1 | sort.psl(psl)
|
Arguments
psl |
a psl object |
Author(s)
Mark Cowley, 3 August 2006
Examples
1 2 3 4 5 6 7 | f <- file.path(system.file(package="blat"), "examples", "test.psl")
psl <- import.psl(f, score=FALSE)
head(sort.psl(psl))
f <- file.path(system.file(package="blat"), "examples", "test.psl")
psl <- import.psl(f, score=TRUE)
head(sort.psl(psl))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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