API for drostlab/myTAI
Evolutionary Transcriptomics

Global functions
.RowVars	Source code
CollapseFromTo	Source code
CollapseReplicates	Man page Source code
CombinatorialSignificance	Man page Source code
DiffGenes	Man page Source code
DivergenceExpressionSetExample	Man page
EarlyConservationTest	Man page Source code
EnrichmentTest	Man page Source code
Expressed	Man page Source code
FlatLineTest	Man page Source code
GATAI	Man page Source code
GetColumnIndexFromTo	Source code
GetGamma	Source code
GroupDiffs	Man page Source code
LateConservationTest	Man page Source code
MatchMap	Man page Source code
PairwiseTest	Man page Source code
PhyloExpressionSetExample	Man page
PlotBarRE	Man page Source code
PlotCIRatio	Man page Source code
PlotCategoryExpr	Man page Source code
PlotContribution	Man page Source code
PlotCorrelation	Man page Source code
PlotDistribution	Man page Source code
PlotEnrichment	Man page Source code
PlotGroupDiffs	Man page Source code
PlotMeans	Man page Source code
PlotMedians	Man page Source code
PlotPattern	Man page Source code
PlotRE	Man page Source code
PlotReplicateQuality	Man page Source code
PlotSelectedAgeDistr	Man page Source code
PlotSignature	Man page Source code
PlotSignatureGATAIGeneRemoval	Man page Source code
PlotSignatureGeneQuantiles	Man page Source code
PlotSignatureMultiple	Man page Source code
PlotSignatureTransformed	Man page Source code
PlotVars	Man page Source code
RE	Man page Source code
REMatrix	Man page Source code
ReductiveHourglassTest	Man page Source code
ReverseHourglassTest	Man page Source code
SelectGeneSet	Man page Source code
SignatureGATAIGeneRemoval	Man page Source code
TAI	Man page Source code
TDI	Man page Source code
TEI	Man page Source code
TPI	Man page Source code
TopExpressionGenes	Man page Source code
TopVarianceGenes	Man page Source code
age.apply	Man page Source code
bar.colors	Man page Source code
bootMatrix	Man page Source code
bootTEI	Man page Source code
consensus	Source code
convergence_plots	Source code
cpp_TAI	Source code
cpp_bootMatrix	Source code
cpp_geom_mean	Source code
cpp_harmonic_mean	Source code
cpp_omitMatrix	Source code
cpp_pMatrix	Source code
cpp_std_error	Source code
custom.myTAI.cols	Source code
ecScore	Man page Source code
flt_null_dist	Source code
flt_null_dist_sample	Source code
flt_p_val	Source code
full_gatai_convergence_plot	Source code
fun	Source code
geom.mean	Man page Source code
get.contingency.tbl	Source code
harm.mean	Man page Source code
is.ExpressionSet	Man page Source code
is_installed_gatai	Man page Source code
lcScore	Man page Source code
omitMatrix	Man page Source code
pMatrix	Man page Source code
pMatrixTEI	Man page Source code
pStrata	Man page Source code
pStrataTEI	Man page Source code
pTAI	Man page Source code
pTDI	Man page Source code
pairScore	Man page Source code
petal_plot	Source code
plot_distribution_expression	Man page Source code
plot_distribution_expression_partialTAI	Man page Source code
plot_distribution_partialTAI	Man page Source code
plot_distribution_partialTAI_qqplot	Man page Source code
plot_gene_set	Man page Source code
plot_gene_set_mean	Man page Source code
pow	Source code
quant	Source code
rcpp_boottei_parallel	Man page Source code
rcpp_pMatrix_parallel	Man page Source code
rcpp_pStrata_parallel	Man page Source code
rcpp_tei_parallel	Man page Source code
re.colors	Source code
remove_genes	Source code
reversehourglassScore	Man page Source code
rhScore	Man page Source code
std.error	Source code
taxid	Man page Source code
tf	Man page Source code
tfPS	Man page Source code
tfStability	Man page Source code
threshold_comparison_plots	Source code