Description Usage Arguments Value Author(s) Examples
Get the names of the feature control sets that are spike-ins.
1 2 3 4 | whichSpike(object)
## S4 method for signature 'SCESet'
whichSpike(object)
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object |
a |
A character vector containing the names of feature control sets that are spike-in sets.
Aaron Lun
1 2 3 4 5 6 7 8 | data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
example_sceset <- calculateQCMetrics(example_sceset,
feature_controls = list(ERCC = 1:40, Mito=41:50))
setSpike(example_sceset) <- "ERCC"
whichSpike(example_sceset)
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