View source: R/RepDaAnalysisFns.R
TopDAClonotypes | R Documentation |
This function extracts condition associated CDR3s given the result of the runDaAnalysis function with a given q-value and p-value cutoff
TopDAClonotypes(candidateList, enriched = T, pValueCutoff = 0.05, qvalue = 0.05)
candidateList |
the list of candidate DA CDR3s, the return value of runDaAnalysis function |
enriched |
logical; true returns differentially enriched CDR3s, false returns differentially de-enriched CDR3s. Default is true |
pValueCutoff |
the cutoff p-value, default is 0.05 |
qvalue |
the cutoff q-value to use, default is 0.05 |
function returns a data frame of the candidate CDR3s that have significant q-values with p-values below the pValueCutoff
TopDAClonotypes(results,enriched=T,pValueCutoff=0.05,qvalue=0.05) # results is an object holding the result of running runDaAnalysis
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