scaleSamples: scale all samples to equal number of sequence reads

In dyohanne/RepAn: Differential abundance Analysis for deep sequenced immune repertoire (Repseq) datasets

scale all samples to equal number of sequence reads

Description

scale all samples to equal number of sequence reads

Usage

scaleSamples(repSeqObj, totalReads = 1e+05, resample = T,
  resampleSize = 3000, useProb = T)

Arguments

repSeqObj	is a repseq data object containing all repertoire sample data
totalReads	the total size of reads per sample to scale our data to. All repertoires are scaled to 100k reads by default.
resample	a boolean argument to decide whether to resample repertoires, needed when data is too big, default is True
resampleSize	Maximum possible number of clonotype reads repertoires will be resampled to, default is 1000.
useProb	a boolean to indicate whether the resampling should be done probablistically or not.

Value

repSeq data Object containing normalized repertoire data after resampling

dyohanne/RepAn documentation built on Feb. 3, 2023, 2:41 p.m.