sampleFromPooled: Pool and resample samples to create reference/background...

In dyohanne/RepAn: Differential abundance Analysis for deep sequenced immune repertoire (Repseq) datasets

Pool and resample samples to create reference/background repertoires and return only CDR3s, normalizes samples to equal number of sequence reads

Description

Pool and resample samples to create reference/background repertoires and return only CDR3s, normalizes samples to equal number of sequence reads

Usage

sampleFromPooled(repSeqObj, nClones, cType = "AA", useProb = T)

Arguments

repSeqObj	is an object containing all repertoire sample data
nClones	number of CDR3 sequences to randomly draw
cType	the type of CDR3 sequence to return for the drawn clones, either AA or NT
useProb	a boolean to indicate whether the resampling should be done probablistically or not.

Value

returns a vector of CDR3 sequences with size nClones that is randomly sampled from the pooled datasets of all repseq samples in repSeqObj

dyohanne/RepAn documentation built on Feb. 3, 2023, 2:41 p.m.