getKmerFrequency: Count kmer frequencies in a CDR3
In dyohanne/RepAn: Differential abundance Analysis for deep sequenced immune repertoire (Repseq) datasets
View source: R/RepDaAnalysisFns.R
getKmerFrequency R Documentation
Count kmer frequencies in a CDR3
Description
Count kmer frequencies in a CDR3
Usage
getKmerFrequency(seqs, type = "NT", k = 4, normForLength = F)
Arguments
seqs
a vector of all CDR3 sequences
type
the type of kmers, NT or AA
k
the size of k, default is 4
normForLength
normalize the kmer frequencies by the length of the CDR3, default is False
Value
a sparse matrix of sequences versus kmer counts
dyohanne/RepAn documentation built on Feb. 3, 2023, 2:41 p.m.
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View source: R/RepDaAnalysisFns.R
| getKmerFrequency | R Documentation |
Count kmer frequencies in a CDR3
Description
Count kmer frequencies in a CDR3
Usage
getKmerFrequency(seqs, type = "NT", k = 4, normForLength = F)
Arguments
seqs |
a vector of all CDR3 sequences |
type |
the type of kmers, NT or AA |
k |
the size of k, default is 4 |
normForLength |
normalize the kmer frequencies by the length of the CDR3, default is False |
Value
a sparse matrix of sequences versus kmer counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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