getPooledSamples: Pool all repertoires
In dyohanne/RepAn: Differential abundance Analysis for deep sequenced immune repertoire (Repseq) datasets
View source: R/RepDaAnalysisFns.R
getPooledSamples R Documentation
Pool all repertoires
Description
Pool all repertoires
Usage
getPooledSamples(repSeqObj, g = NULL)
Arguments
repSeqObj
is an object containing all repertoire sample data
g
a vector indicating the group to sample from, default is NULL and pools all samples from all groups, to pool samples only in group 1, g should be c(1)
Value
a single repSeq dataset that has all CDR3 sequences from all samples, the frequency of all CDR3s is updated depending o the original counts in the original data.
dyohanne/RepAn documentation built on Feb. 3, 2023, 2:41 p.m.
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View source: R/RepDaAnalysisFns.R
| getPooledSamples | R Documentation |
Pool all repertoires
Description
Pool all repertoires
Usage
getPooledSamples(repSeqObj, g = NULL)
Arguments
repSeqObj |
is an object containing all repertoire sample data |
g |
a vector indicating the group to sample from, default is NULL and pools all samples from all groups, to pool samples only in group 1, g should be c(1) |
Value
a single repSeq dataset that has all CDR3 sequences from all samples, the frequency of all CDR3s is updated depending o the original counts in the original data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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