addInfo: Add metadata information to CellRouter object.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Add metadata information to CellRouter object.

Description

Include metadata information in the CellRouter metadata table assay@sampTab. If you have clusters identified by other algorithm, you can use this function to perform all the analysis available in CellRouter using your previously identified clusters: just select the corresponding columns in the table assay@sampTab.

Usage

addInfo(
  object,
  assay.type = "RNA",
  sample.name = "Sample1",
  metadata,
  colname,
  metadata.column = "population"
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
sample.name	character; the name of the tissue sample.
metadata	data frame or vector; metadata to be added.
colname	character; column name to be added to assay@sampTab in case metadata is a vector.
metadata.column	character; column to selected from the metadata to be added and included in assay@sampTab.

Value

CellRouter object with the sampTab slot updated.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.