calculateObservedMean: Mean expression between ligands and receptors.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Mean expression between ligands and receptors.

Description

Calculate mean gene expression between ligand and receptor of each interaction in the

Usage

calculateObservedMean(interactions, mean.expr)

Arguments

interactions	data frame; the interactions as calculated by the population.pairing function.
mean.expr	list; the statistics of the expressed genes as calculated by the computeValue method of CellRouter.

Value

data frame; the same as returned by the population.pairing function, interactions with celltype1, celltype2, pair, ligand, and receptor, plus the columns of mean ligand expression (mean.ligand), mean receptor expression (mean.receptor), and mean pair expression (mean).

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.