computeTSNE-methods: Perform t-SNE.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Perform t-SNE.

Description

Dimensionality reduction using t-SNE.

Usage

computeTSNE(object, num.pcs, perplexity = 30, max_iter = 2000, seed = 7)

## S4 method for signature 'CellRouter'
computeTSNE(object, num.pcs, perplexity = 30, max_iter = 2000, seed = 7)

Arguments

object	CellRouter object.
num.pcs	numeric; number of principal components used for dimensionality reduction using t-SNE.
perplexity	numeric; perplexity.
max_iter	numeric; maximum number of iterations.
seed	numeric; seed.

Value

CellRouter object with the tsne slot updated.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.