display_preferred_pdb_structure_menu: Display Preferred PDB Structure Menu

Description Usage Arguments

View source: R/pdb_functions2.R

Description

This function creates a menu interface for preferred PDB structure

Usage

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display_preferred_pdb_structure_menu(protein_name, fasta_file,
  pwa_score_threshold = 500, peptide_sequence = NULL)

Arguments

protein_name

Protein name that corresponds to name in fasta_file to extract sequence

fasta_file

FASTA file as read by seqinr::read.fasta()

pwa_score_threshold

Minimum score to determine a match using Biostrings::pairwiseAlignment()

peptide_sequence

An optional peptide sequence to use for recommendations if trying to match a peptide to a structure. Defaults to NULL


egmg726/crisscrosslinker documentation built on March 20, 2019, 12:11 a.m.