display_preferred_pdb_structure_menu: Display Preferred PDB Structure Menu

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function creates a menu interface for preferred PDB structure

Usage

display_preferred_pdb_structure_menu(
  protein_name,
  fasta_file,
  pwa_score_threshold = 500,
  peptide_sequence = NULL
)

Arguments

protein_name	Protein name that corresponds to name in fasta_file to extract sequence
fasta_file	FASTA file as read by seqinr::read.fasta()
pwa_score_threshold	Minimum score to determine a match using Biostrings::pairwiseAlignment()
peptide_sequence	An optional peptide sequence to use for recommendations if trying to match a peptide to a structure. Defaults to NULL

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.