quick_pwa_from_pdb: Quick PWA from PDB

Description Usage Arguments

View source: R/pdb_functions2.R

Description

This function is a shortcut to do a BioStrings::pairwiseAlignment() with a selected chain in a PDB file

Usage

1
2
quick_pwa_from_pdb(query_sequence, pdb_read, chain,
  use_resid_and_resno = FALSE)

Arguments

query_sequence

Sequence to match the PDB sequence against

pdb_read

PDB file loaded by bio3d::read.pdb()

chain

Character indicating the chain on the PDB file

use_resid_and_resno

Will get the resno_and_resid using get_resno_and_resid() from chain in PDB file rather than the seqres for alignment. Defaults to FALSE.


egmg726/crisscrosslinker documentation built on Sept. 8, 2018, 9:30 p.m.