quick_pwa_from_pdb: Quick PWA from PDB

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function is a shortcut to do a BioStrings::pairwiseAlignment() with a selected chain in a PDB file

Usage

quick_pwa_from_pdb(
  query_sequence,
  pdb_read,
  chain,
  use_resid_and_resno = FALSE
)

Arguments

query_sequence	Sequence to match the PDB sequence against
pdb_read	PDB file loaded by bio3d::read.pdb2()
chain	Character indicating the chain on the PDB file
use_resid_and_resno	Will get the resno_and_resid using get_resno_and_resid() from chain in PDB file rather than the seqres for alignment. Defaults to FALSE.

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.