Files in egmg726/crisscrosslinker

DESCRIPTION
NAMESPACE
R/blast.menuOptions.R R/blastMenu.R R/generate_2d_pdb_file.R R/get_pdb_info.R R/get_pwa_ranges.R R/get_pwa_strings.R R/importedFunctions.R R/make_pdb_menu_options.R R/pdb_functions2.R R/ppi.alignPDB.R R/ppi.combineData.R R/ppi.distAnalysis.R R/ppi.loadData.R R/ppi.matchPDB.R R/ppi.matchPDB2.R R/ppi.matchUniprot.R R/ppi.pymol.R R/rbd.alignBS.R R/rbd.find_new_pattern.R R/rbd.getBSfromDF.R R/rbd.getBindingSeq.R R/rbd.getBindingSeq3.R R/renumber_and_identify_missing_aa.R R/uniprot.PDBmap.R R/uniprotfasta.R README.md
data/chimera_colors.RData
data/pymol_color_table.RData
data/rbdmapData.RData
images/crisscrosslinker_logo.png
inst/extdata/NSMB_FASTA/PRC2_5m.fasta
inst/extdata/NSMB_FASTA/PRC2_5m_Uniprot.fasta
inst/extdata/NSMB_RBDmap/Repeat01_NoXL_ArgC_eluate.txt
inst/extdata/NSMB_RBDmap/Repeat01_NoXL_ArgC_input.txt
inst/extdata/NSMB_RBDmap/Repeat01_NoXL_LysC_eluate.txt
inst/extdata/NSMB_RBDmap/Repeat01_NoXL_LysC_input.txt
inst/extdata/NSMB_RBDmap/Repeat01_UV_ArgC_eluate.txt
inst/extdata/NSMB_RBDmap/Repeat01_UV_ArgC_input.txt
inst/extdata/NSMB_RBDmap/Repeat01_UV_LysC_eluate.txt
inst/extdata/NSMB_RBDmap/Repeat01_UV_LysC_input.txt
inst/extdata/NSMB_RBDmap/Repeat02_NoXL_ArgC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat02_NoXL_ArgC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat02_NoXL_LysC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat02_NoXL_LysC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat02_UV_ArgC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat02_UV_ArgC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat02_UV_LysC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat02_UV_LysC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_NoXL_ArgC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_NoXL_ArgC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_NoXL_LysC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_NoXL_LysC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_UV_ArgC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_UV_ArgC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_UV_LysC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat03_UV_LysC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_NoXL_ArgC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_NoXL_ArgC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_NoXL_LysC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_NoXL_LysC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_UV_ArgC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_UV_ArgC_input_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_UV_LysC_eluate_MaxQuant_txt.txt
inst/extdata/NSMB_RBDmap/Repeat04_UV_LysC_input_MaxQuant_txt.txt
inst/extdata/NSMB_XLMS/PRC2-AEBP2 _4.xlsx
inst/extdata/NSMB_XLMS/PRC2-AEBP2_1.xlsx
inst/extdata/NSMB_XLMS/PRC2-AEBP2_2.xlsx
inst/extdata/NSMB_XLMS/PRC2-AEBP2_3.xlsx
inst/extdata/NSMB_XLMS/PRC2-AEBP2_5.xlsx
inst/extdata/NSMB_XLMS/PRC2-AEBP2_6.csv
inst/extdata/NSMB_XLMS/PRC2-AEBP2_7.csv
inst/extdata/NSMB_XLMS/PRC2-MTF2-EPOP_1.xlsx
inst/extdata/NSMB_XLMS/PRC2-MTF2-EPOP_2.csv
inst/extdata/NSMB_XLMS/PRC2-PHF19_1.xlsx
inst/extdata/NSMB_XLMS/PRC2-PHF19_2.xlsx
inst/extdata/NSMB_XLMS/PRC2-PHF19_3.xlsx
inst/extdata/NSMB_XLMS/PRC2-PHF19_4.csv
inst/extdata/NSMB_misc/PRC2_alternative_dict.csv
inst/extdata/NSMB_misc/PRC2_protein_dict.csv
man/blast.menu.Rd man/blast.menuOptions.Rd man/check_download_read_pdb.Rd man/color.pymol.Rd man/consolidate_resno_and_resid.Rd man/display_preferred_pdb_structure_menu.Rd man/do_sr_chain_loop.Rd man/fasta.combine.Rd man/firstup.Rd man/generate_2d_pdb_file.Rd man/generate_pdb_lists_from_pdb_csv.Rd man/get_missing_amino_acids.Rd man/get_pdb_info.Rd man/get_pwa_ranges.Rd man/get_pwa_strings.Rd man/get_resno_and_resid.Rd man/get_uniprot_info_from_proteins_api.Rd man/get_vector_of_distances_by_pos_freq.Rd man/get_xyz_coordinates_pdb.Rd man/get_xyz_min_max.Rd man/go_through_menu_loops.Rd man/load_proxl_data.Rd man/make_binding_site_df.Rd man/make_binding_site_rows_for_supp_df.Rd man/make_intensity_output_df.Rd man/make_pdb_menu_options.Rd man/make_plink2_master_list.Rd man/make_proteins_and_intensity_list_from_pipeline_output.Rd man/make_renumbered_pdb_vectors.Rd man/make_start_end_pdb_df_output2.Rd man/make_uv_xlms_visualization.Rd man/ppi.alignPDB.Rd man/ppi.analyze.Rd man/ppi.combineData.Rd man/ppi.distAnalysis.Rd man/ppi.freqCount.Rd man/ppi.loadData.Rd man/ppi.matchPDB.Rd man/ppi.matchPDB2.Rd man/ppi.matchUniprot.Rd man/ppi.pymol.Rd man/ppi.xinet.Rd man/pymol_color_table.Rd man/quick_pwa_from_pdb.Rd man/quick_resno_and_resid.Rd man/rbd.alignBS.Rd man/rbd.freqVector.Rd man/rbd.getBSfromDF.Rd man/rbd.getBSfromIET.Rd man/rbd.getBindingSeq.Rd man/rbd.getBindingSeq3.Rd man/rbd.makeIEPlot.Rd man/rbd.makeIETable.Rd man/rbd.makeSeqHitList.Rd man/rbd.menuDBSearch.Rd man/rbd.pymol.Rd man/renumber_and_identify_missing_aa.Rd man/renumber_binding_site_df_from_uniprot_fasta.Rd man/split_sequences.Rd man/split_sequences2.Rd man/uniprot.fasta.Rd tutorials/crisscross_BS3_tutorial_script.R tutorials/crisscross_RBDMap_tutorial_script.R tutorials/nsmb_pipeline_ppi.Rmd tutorials/nsmb_pipeline_rbdmap.Rmd
egmg726/crisscrosslinker documentation built on March 20, 2019, 12:11 a.m.