rbd.getBSfromIET: Get Binding Sequences from Input/Eluate Table

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function gets the binding sequences from the input eluate table

Usage

rbd.getBSfromIET(
  filtered_input_eluate_table,
  fasta_file,
  align_to = "PDB",
  protein_to_uniprot_id = NULL,
  protein_dict = NULL,
  include_ambiguous = FALSE
)

Arguments

filtered_input_eluate_table	Output from rbd.makeIETable()
fasta_file	FASTA file from seqinr::read.fasta()
align_to	What source to align the BS to: "PDB","FASTA","UniProt"
protein_to_uniprot_id	Table containing protein_id,uniprot_id,pdb_id
protein_dict	protein_dict
include_ambiguous	include_ambiguous

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.