uniprot.fasta: Fetch FASTA sequence from Uniprot

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function fetches the FASTA sequence directly from the UniProt .fasta page

Usage

uniprot.fasta(
  uniprot.id,
  download.fasta = FALSE,
  console.message = TRUE,
  fasta.directory = getwd()
)

Arguments

uniprot.id	Uniprot ID of sequence wanted in the form "ID-isoform". Leave out isoform if using the canonical sequence.
download.fasta	If TRUE, will download the FASTA file to your chosen directory. Defaults to FALSE.
console.message	If TRUE, will display the name of the FASTA file when being loaded into R in the console. Defaults to TRUE.
fasta.directory	Directory chosen for your downloaded FASTA file. Defaults to current directory.

Author(s)

Emma Gail

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.