rbd.xinet: RBDmap: xiNET Output

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function outputs an annotation file for import into the web server xiNET. Designed to be used in conjunction with output from ppi.xinet().

Usage

rbd.xinet(
  bs.output,
  colors = c("#d0d0d0", "#2f5ac6", "#e50000"),
  database = "UniProt",
  write.file = TRUE,
  file.name = "rbd_xinet.csv"
)

Arguments

bs.output	Output from function rbd.getBSfromIET()
colors	Colors to be used for the annotation file. Can be an RColorBrewer palette name, virdis palette name, or list of hexcodes.
database	Database to be used for the visualization. Can choose betwen "PDB", "UniProt", or "FASTA". Defaults to UniProt.
write.file	If TRUE, will write to a .csv file
file.name	File name for the written out file.

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.