Description Usage Arguments Author(s)
This function aligns the binding sequences
1 2 3 4 5 6 7 | rbd.alignBS2(
bs.output,
alignIDs,
alignTo = c("pdb", "uniprot", "fasta"),
uniprot2pdb = TRUE,
allowPartialBS = FALSE
)
|
bs.output |
Output from rbd.getBSfromIET() |
alignIDs |
alignIDs containing columns of protein names, UniProt and/or PDB identifiers |
alignTo |
What the sequences should be aligned to. Choose between 'pdb' and 'uniprot' |
uniprot2pdb |
Boolean, defaults to TRUE. This will align to Uniprot sequence before PDB and using the uniprot.PDBmap function to improve alignment accuracy. Highly recommended for PDB alignments. |
allowpartialBS |
Boolean, defaults to FALSE. will allow partial matches of binding sequences to PDB/UniProt sequences |
Emma Gail
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