Description Usage Arguments Value Author(s)
View source: R/rbd.getBSfromDF.R
Retrieves the binding sequences based on the information given in the dataframe and includes them as part of the output.
1 | rbd.getBSfromDF(rbd.df, fasta = NULL, cleave_offset = 4)
|
rbd.df |
Data.frame containing the columns protID, trypticPeptide, and enzyme. |
fasta |
Name of fasta file or loaded fasta file by seqinr::read.fasta(). Defaults to NULL. |
cleave_offset |
Number of amino acids (AAs) that have to be between the AAs cut by the enzyme. Defaults to 4 as defined by the original RBDmap experiment. |
The original rbd.df with 3 columns added: the proteolytic fragment, the fragment start, and fragment end.
Emma Gail
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