Description Usage Arguments Author(s)
View source: R/pdb_functions2.R
This function creates a hit list of significant XL in UV XL-MS dataset
1 2 3 4 5 6 7 8 | rbd.makeSeqHitList(
fasta_file,
experiment_directory = NULL,
file_format = NULL,
cutoff_score = 20,
RK.cleavage = TRUE,
files.list = NULL
)
|
fasta_file |
FASTA file as loaded by seqinr::read.fasta() |
experiment_directory |
Directory where experiment files are. If NULL, defaults to current directory using getwd(). |
file_format |
Can be either 'csv' or 'xlsx', the suffix to the experiment files |
cutoff_score |
Cutoff for Andromeda score. Defaults to 20. |
RK.cleavage |
If TRUE, will make sure that the cleavage sites alternate between R and K. |
files.list |
If uploading a list of files directly instead of the directory, list the files with the appropriate paths. |
Emma Gail
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