rbd.makeSeqHitList: Make sequence hit list

Description Usage Arguments

View source: R/pdb_functions2.R

Description

This function creates a hit list of significant XL in UV XL-MS dataset

Usage

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rbd.makeSeqHitList(fasta_file, experiment_directory = NULL,
  file_format = "csv", cutoff_score = 20, RK.cleavage = TRUE)

Arguments

fasta_file

FASTA file as loaded by seqinr::read.fasta()

experiment_directory

Directory where experiment files are. If NULL, defaults to current directory using getwd().

file_format

Can be either 'csv' or 'xlsx', the suffix to the experiment files

cutoff_score

Cutoff for Andromeda score. Defaults to 20.


egmg726/crisscrosslinker documentation built on Sept. 8, 2018, 9:30 p.m.