uniprot.PDBmap: UniProt PDBmap

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function is able to connect with the RCSB API to be able to match a residue number of either a PDB chain or UniProt canonical sequence to its match.

Usage

uniprot.PDBmap(
  pdb_id,
  resno,
  chain = NULL,
  uniprot_id = NULL,
  output = c("pdb", "uniprot")
)

Arguments

pdb_id	Valid ID of a PDB accession number within RCSB
resno	Residue number(s) to match against the PDB/UniProt number.
chain	Chain ID within the PDB to match. Needed if matching PDB residue number to UniProt ID. Defaults to NULL
uniprot_id	UniProt ID of protein. Needed if matching UniProt sequence to residue within PDB
output	Choose between 'pdb' or 'uniprot' for which ID the output residue number should correspond to

Author(s)

Emma Gail

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.