Description Usage Arguments Author(s)
View source: R/uniprot.PDBmap.R
This function is able to connect with the RCSB API to be able to match a residue number of either a PDB chain or UniProt canonical sequence to its match.
1 2 3 4 5 6 7 | uniprot.PDBmap(
pdb_id,
resno,
chain = NULL,
uniprot_id = NULL,
output = c("pdb", "uniprot")
)
|
pdb_id |
Valid ID of a PDB accession number within RCSB |
resno |
Residue number(s) to match against the PDB/UniProt number. |
chain |
Chain ID within the PDB to match. Needed if matching PDB residue number to UniProt ID. Defaults to NULL |
uniprot_id |
UniProt ID of protein. Needed if matching UniProt sequence to residue within PDB |
output |
Choose between 'pdb' or 'uniprot' for which ID the output residue number should correspond to |
Emma Gail
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