rbd.makeIEPlot: Make input/eluate plot

Description Usage Arguments

View source: R/pdb_functions2.R

Description

This function takes the data from the input/eluate table and makes it into a plot

Usage

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rbd.makeIEPlot(input_eluate_table, prefixes, proteases = c("LysC", "ArgC"),
  title = "Eluate vs. Input", palette = "Dark2", fill = "#eaf2ff",
  colour = "#eaf2ff", size = 0.5,
  pipeline_generated_plot_title = "pipeline_generated_plot.png")

Arguments

input_eluate_table

Output from make_input_eluate_table()

prefixes

List of control and experimental prefixes

proteases

List of secondary prefixes in file names, defaults to proteases used 'ArgC' and 'LysC'

palette

Palette from RColorBrewer to be used for plot. Defaults to 'Dark2'

fill

Same as "fill" from ggplot2 for plot

colour

Same as "colour" from ggplot2 for plot

size

Same as "size" from ggplot2 for plot

pipeline_generated_plot_title

Title for generated plot. Must end in '.png'. Defaults to 'pipeline_generated_plot.png'.


egmg726/crisscrosslinker documentation built on Sept. 8, 2018, 9:30 p.m.