rbd.makeIEPlot: Make input/eluate plot

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function takes the data from the input/eluate table and makes it into a plot

Usage

rbd.makeIEPlot(
  input_eluate_table,
  prefixes,
  proteases = c("LysC", "ArgC"),
  title = "Eluate vs. Input",
  palette = "Dark2",
  fill = "#eaf2ff",
  colour = "#eaf2ff",
  size = 0.5,
  pipeline_generated_plot_title = "pipeline_generated_plot.png"
)

Arguments

input_eluate_table	Output from make_input_eluate_table()
prefixes	List of control and experimental prefixes
proteases	List of secondary prefixes in file names, defaults to proteases used 'ArgC' and 'LysC'
palette	Palette from RColorBrewer to be used for plot. Defaults to 'Dark2'
fill	Same as "fill" from ggplot2 for plot
colour	Same as "colour" from ggplot2 for plot
size	Same as "size" from ggplot2 for plot
pipeline_generated_plot_title	Title for generated plot. Must end in '.png'. Defaults to 'pipeline_generated_plot.png'.

Author(s)

Emma Gail

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.