rbd.freqVector: Get Frequency Vector for RBDmap Data

In egmg726/crisscrosslinker: An R package for protein interaction analysis

Description

This function gets the frequency vector of the binding sequences detected

Usage

rbd.freqVector(
  bs_output,
  name_by = "pro_name",
  heatmap = TRUE,
  db_selection = NULL,
  colors = c("#d0d0d0", "#2f5ac6", "#e50000"),
  save_plot = TRUE
)

Arguments

bs_output	data.frame() output from rbd.getBSfromIET() or rbd.getBSfromDF()
name_by	Name of column in bs_output that will correspond to where the binding sites will be measured
heatmap	If TRUE, a heatmap will be produced. If FALSE, the data.frame used for the heatmap will be returned
db_selection	Database to be used for the heatmap (e.g. FASTA, PDB, or UniProt)
colors	Colors to be used for the heatmap, if TRUE. Can be a list of hexcodes/standard R colors or RColorBrewer palette
save_plot	If TRUE, will save the plot to your working directory

Author(s)

Emma Gail

egmg726/crisscrosslinker documentation built on Jan. 23, 2021, 1:50 a.m.